vgrG2a protein (Pseudomonas sp. RIT357) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

vgrG2a

Protein VgrG2a. (672 aa)

Predicted Functional Partners:

impH3

0.908

impH2

0.907

tssG

0.907

impB2_1

0.903

impB2_2

0.903

impB3

0.898

impK

0.895

impA2_2

0.877

BW43_00489

0.876

impA2_1

0.869

Your Current Organism:

Pseudomonas sp. RIT357

NCBI taxonomy Id: 1470593
Other names: P. sp. RIT357

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BW43_00489	impA2_1	BW43_00489	BW43_00486	Hemolysin co-regulated type VI secretion system effector.	Protein ImpA.	0.953
BW43_00489	impA2_2	BW43_00489	BW43_04269	Hemolysin co-regulated type VI secretion system effector.	Protein ImpA.	0.928
BW43_00489	impB2_1	BW43_00489	BW43_00487	Hemolysin co-regulated type VI secretion system effector.	Protein ImpB.	0.990
BW43_00489	impB2_2	BW43_00489	BW43_04268	Hemolysin co-regulated type VI secretion system effector.	Protein ImpB.	0.983
BW43_00489	impB3	BW43_00489	BW43_02373	Hemolysin co-regulated type VI secretion system effector.	Protein ImpB.	0.872
BW43_00489	impH2	BW43_00489	BW43_00492	Hemolysin co-regulated type VI secretion system effector.	Protein ImpH.	0.965
BW43_00489	impH3	BW43_00489	BW43_02369	Hemolysin co-regulated type VI secretion system effector.	Protein ImpH.	0.850
BW43_00489	impK	BW43_00489	BW43_00481	Hemolysin co-regulated type VI secretion system effector.	Protein ImpK.	0.935
BW43_00489	tssG	BW43_00489	BW43_04263	Hemolysin co-regulated type VI secretion system effector.	Type VI secretion protein TssG.	0.929
BW43_00489	vgrG2a	BW43_00489	BW43_02510	Hemolysin co-regulated type VI secretion system effector.	Protein VgrG2a.	0.876
impA2_1	BW43_00489	BW43_00486	BW43_00489	Protein ImpA.	Hemolysin co-regulated type VI secretion system effector.	0.953
impA2_1	impB2_1	BW43_00486	BW43_00487	Protein ImpA.	Protein ImpB.	0.972
impA2_1	impB2_2	BW43_00486	BW43_04268	Protein ImpA.	Protein ImpB.	0.934
impA2_1	impB3	BW43_00486	BW43_02373	Protein ImpA.	Protein ImpB.	0.694
impA2_1	impH2	BW43_00486	BW43_00492	Protein ImpA.	Protein ImpH.	0.952
impA2_1	impH3	BW43_00486	BW43_02369	Protein ImpA.	Protein ImpH.	0.870
impA2_1	impK	BW43_00486	BW43_00481	Protein ImpA.	Protein ImpK.	0.928
impA2_1	tssG	BW43_00486	BW43_04263	Protein ImpA.	Type VI secretion protein TssG.	0.935
impA2_1	vgrG2a	BW43_00486	BW43_02510	Protein ImpA.	Protein VgrG2a.	0.869
impA2_2	BW43_00489	BW43_04269	BW43_00489	Protein ImpA.	Hemolysin co-regulated type VI secretion system effector.	0.928